J4_1Y69_009

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Y69_009 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1432

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

1Y69|1|0|C|308
1Y69|1|0|G|309
1Y69|1|0|A|310
1Y69|1|0|A|311
1Y69|1|0|G|312
*
1Y69|1|0|C|327
1Y69|1|0|A|328
1Y69|1|0|C|329
1Y69|1|0|C|330
*
1Y69|1|0|G|334
1Y69|1|0|A|335
1Y69|1|0|A|336
*
1Y69|1|0|U|348
1Y69|1|0|G|349
1Y69|1|0|U|350
1Y69|1|0|A|351
1Y69|1|0|G|352

Current chains

Chain 0

23S ribosomal RNA

Nearby chains