J4_1YHQ_001

3D structure

PDB id

1YHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Azithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1YHQ|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YHQ_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.025

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1YHQ|1|0|C|239
1YHQ|1|0|C|240
*
1YHQ|1|0|G|379
1YHQ|1|0|A|380
1YHQ|1|0|G|381
1YHQ|1|0|U|382
1YHQ|1|0|A|383
1YHQ|1|0|G|384
*
1YHQ|1|0|C|405
1YHQ|1|0|G|406
1YHQ|1|0|A|407
1YHQ|1|0|A|408
1YHQ|1|0|U|409
1YHQ|1|0|A|410
1YHQ|1|0|A|411
1YHQ|1|0|C|412
*
1YHQ|1|0|G|428
1YHQ|1|0|A|429
1YHQ|1|0|A|430
1YHQ|1|0|G|431

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain M

50S Ribosomal Protein L15E