J4_1YIJ_001

3D structure

PDB id

1YIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Telithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

1YIJ|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YIJ_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0291

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

1YIJ|1|0|C|239
1YIJ|1|0|C|240
*
1YIJ|1|0|G|379
1YIJ|1|0|A|380
1YIJ|1|0|G|381
1YIJ|1|0|U|382
1YIJ|1|0|A|383
1YIJ|1|0|G|384
*
1YIJ|1|0|C|405
1YIJ|1|0|G|406
1YIJ|1|0|A|407
1YIJ|1|0|A|408
1YIJ|1|0|U|409
1YIJ|1|0|A|410
1YIJ|1|0|A|411
1YIJ|1|0|C|412
*
1YIJ|1|0|G|428
1YIJ|1|0|A|429
1YIJ|1|0|A|430
1YIJ|1|0|G|431

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain M

50S Ribosomal Protein L15E