J4_1YIT_008

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1YIT|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YIT_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0426

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

1YIT|1|0|C|1889
1YIT|1|0|U|1890
1YIT|1|0|G|1891
*
1YIT|1|0|C|1946
1YIT|1|0|G|1947
*
1YIT|1|0|C|1965
1YIT|1|0|U|1966
1YIT|1|0|U|1967
1YIT|1|0|A|1968
1YIT|1|0|A|1969
1YIT|1|0|G|1970
1YIT|1|0|G|1971
1YIT|1|0|U|1972
1YIT|1|0|A|1973
1YIT|1|0|G|1974
*
1YIT|1|0|U|2008
1YIT|1|0|G|2009
1YIT|1|0|A|2010
1YIT|1|0|A|2011
1YIT|1|0|U|2012
1YIT|1|0|G|2013

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2P