J4_1YJ9_008

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

1YJ9|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YJ9_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0532

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

1YJ9|1|0|C|1889
1YJ9|1|0|U|1890
1YJ9|1|0|G|1891
*
1YJ9|1|0|C|1946
1YJ9|1|0|G|1947
*
1YJ9|1|0|C|1965
1YJ9|1|0|U|1966
1YJ9|1|0|U|1967
1YJ9|1|0|A|1968
1YJ9|1|0|A|1969
1YJ9|1|0|G|1970
1YJ9|1|0|G|1971
1YJ9|1|0|U|1972
1YJ9|1|0|A|1973
1YJ9|1|0|G|1974
*
1YJ9|1|0|U|2008
1YJ9|1|0|G|2009
1YJ9|1|0|A|2010
1YJ9|1|0|A|2011
1YJ9|1|0|U|2012
1YJ9|1|0|G|2013

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P