J4_1YJW_002

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YJW_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.0364

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

1YJW|1|0|A|302
1YJW|1|0|C|303
1YJW|1|0|G|304
1YJW|1|0|A|305
1YJW|1|0|A|306
1YJW|1|0|G|307
*
1YJW|1|0|C|323
1YJW|1|0|G|324
1YJW|1|0|U|325
1YJW|1|0|G|326
*
1YJW|1|0|C|330
1YJW|1|0|A|331
1YJW|1|0|G|332
*
1YJW|1|0|C|344
1YJW|1|0|G|345
1YJW|1|0|U|346
1YJW|1|0|A|347
1YJW|1|0|C|348
1YJW|1|0|U|349

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4E

Chain T

50S RIBOSOMAL PROTEIN L24P