J4_1Z58_004

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1Z58_004 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.1063

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

1Z58|1|2|G|1763
1Z58|1|2|A|1764
1Z58|1|2|C|1765
1Z58|1|2|U|1766
1Z58|1|2|G|1767
*
1Z58|1|2|C|1779
1Z58|1|2|A|1780
1Z58|1|2|C|1781
1Z58|1|2|A|1782
1Z58|1|2|G|1783
*
1Z58|1|2|U|1819
1Z58|1|2|G|1820
1Z58|1|2|A|1821
1Z58|1|2|C|1822
*
1Z58|1|2|G|1958
1Z58|1|2|U|1959
1Z58|1|2|A|1960
1Z58|1|2|A|1961
1Z58|1|2|C|1962

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains