J4_1Z58_008

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGCCCGG*CGGCGGCC*GGUCCUAAGGUAGC*GCACGAAAG

Length

39 nucleotides

Bulged bases

1Z58|1|2|C|1830, 1Z58|1|2|U|1909, 1Z58|1|2|C|1948, 1Z58|1|2|A|1949, 1Z58|1|2|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Z58|1|2|C|1825
1Z58|1|2|U|1826
1Z58|1|2|G|1827
1Z58|1|2|C|1828
1Z58|1|2|C|1829
1Z58|1|2|C|1830
1Z58|1|2|G|1831
1Z58|1|2|G|1832
*
1Z58|1|2|C|1885
1Z58|1|2|G|1886
1Z58|1|2|G|1887
1Z58|1|2|C|1888
1Z58|1|2|G|1889
1Z58|1|2|G|1890
1Z58|1|2|C|1891
1Z58|1|2|C|1892
*
1Z58|1|2|G|1904
1Z58|1|2|G|1905
1Z58|1|2|U|1906
1Z58|1|2|C|1907
1Z58|1|2|C|1908
1Z58|1|2|U|1909
1Z58|1|2|A|1910
1Z58|1|2|A|1911
1Z58|1|2|G|1912
1Z58|1|2|G|1913
1Z58|1|2|U|1914
1Z58|1|2|A|1915
1Z58|1|2|G|1916
1Z58|1|2|C|1917
*
1Z58|1|2|G|1947
1Z58|1|2|C|1948
1Z58|1|2|A|1949
1Z58|1|2|C|1950
1Z58|1|2|G|1951
1Z58|1|2|A|1952
1Z58|1|2|A|1953
1Z58|1|2|A|1954
1Z58|1|2|G|1955

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains