J4_22TU_006

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

22TU|1|L5|A|2366, 22TU|1|L5|U|2369, 22TU|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

22TU|1|L5|C|2365
22TU|1|L5|A|2366
22TU|1|L5|A|2367
22TU|1|L5|A|2368
22TU|1|L5|U|2369
22TU|1|L5|A|2370
22TU|1|L5|U|2371
*
22TU|1|L5|A|2389
22TU|1|L5|G|2390
22TU|1|L5|G|2391
*
22TU|1|L5|C|2824
22TU|1|L5|A|2825
22TU|1|L5|U|2826
22TU|1|L5|G|2827
22TU|1|L5|U|2828
22TU|1|L5|U|2829
*
22TU|1|L5|A|3856
22TU|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31