J4_22TU_010

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

22TU|1|L5|G|3634
22TU|1|L5|A|3635
22TU|1|L5|C|3636
22TU|1|L5|U|3637
22TU|1|L5|G|3638
*
22TU|1|L5|C|3650
22TU|1|L5|A|3651
22TU|1|L5|A|3652
22TU|1|L5|A|3653
22TU|1|L5|G|3654
*
22TU|1|L5|U|3690
22TU|1|L5|G|3691
22TU|1|L5|A|3692
22TU|1|L5|U|3693
22TU|1|L5|U|3694
*
22TU|1|L5|A|3821
22TU|1|L5|U|3822
22TU|1|L5|G|3823
22TU|1|L5|A|3824
22TU|1|L5|A|3825
22TU|1|L5|C|3826

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA