J4_8GLP_009

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

8GLP|1|L5|G|3634
8GLP|1|L5|A|3635
8GLP|1|L5|C|3636
8GLP|1|L5|PSU|3637
8GLP|1|L5|G|3638
*
8GLP|1|L5|C|3650
8GLP|1|L5|A|3651
8GLP|1|L5|A|3652
8GLP|1|L5|A|3653
8GLP|1|L5|G|3654
*
8GLP|1|L5|U|3690
8GLP|1|L5|G|3691
8GLP|1|L5|A|3692
8GLP|1|L5|U|3693
8GLP|1|L5|U|3694
*
8GLP|1|L5|A|3821
8GLP|1|L5|U|3822
8GLP|1|L5|G|3823
8GLP|1|L5|A|3824
8GLP|1|L5|A2M|3825
8GLP|1|L5|C|3826

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8 (uL2)

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA