J4_28LN_003

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUA(2MG)*C(M2G)(PSU)*AAG(G7M)(H2U)(5MC)G*CA

Length

16 nucleotides

Bulged bases

28LN|1|B2|U|8, 28LN|1|B2|H2U|47, 28LN|1|B2|5MC|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_28LN_003 not in the Motif Atlas

Homologous match to J4_2ZUE_001

Geometric discrepancy: 0.4165

The information below is about J4_2ZUE_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

28LN|1|B2|U|7
28LN|1|B2|U|8
28LN|1|B2|A|9
28LN|1|B2|2MG|10
*
28LN|1|B2|C|25
28LN|1|B2|M2G|26
28LN|1|B2|PSU|27
*
28LN|1|B2|A|43
28LN|1|B2|A|44
28LN|1|B2|G|45
28LN|1|B2|G7M|46
28LN|1|B2|H2U|47
28LN|1|B2|5MC|48
28LN|1|B2|G|49
*
28LN|1|B2|C|65
28LN|1|B2|A|66

Current chains

Chain B2

tRNA-Met-CAT

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain AS

Small ribosomal subunit protein uS13

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BI

60S ribosomal protein L10