J4_28LN_004

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

28LN|1|B5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|C|111
28LN|1|B5|C|112
*
28LN|1|B5|G|278
28LN|1|B5|A|279
28LN|1|B5|G|280
28LN|1|B5|U|281
28LN|1|B5|C|282
28LN|1|B5|G|283
*
28LN|1|B5|C|304
28LN|1|B5|A|305
28LN|1|B5|A|306
28LN|1|B5|A|307
28LN|1|B5|G|308
28LN|1|B5|C|309
28LN|1|B5|G|310
*
28LN|1|B5|U|327
28LN|1|B5|A|328
28LN|1|B5|A|329
28LN|1|B5|G|330

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

60S ribosomal protein L13

Chain BN

60S ribosomal protein L15

Chain Bh

60S ribosomal protein L35

Chain Bi

60S ribosomal protein L36