J4_28LN_005

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

28LN|1|B5|C|216, 28LN|1|B5|C|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|C|196
28LN|1|B5|A|197
28LN|1|B5|A|198
28LN|1|B5|G|199
*
28LN|1|B5|C|215
28LN|1|B5|C|216
28LN|1|B5|C|217
28LN|1|B5|A|218
28LN|1|B5|G|219
28LN|1|B5|C|220
28LN|1|B5|C|221
28LN|1|B5|C|222
*
28LN|1|B5|G|226
28LN|1|B5|A|227
28LN|1|B5|C|228
*
28LN|1|B5|G|240
28LN|1|B5|G|241
28LN|1|B5|U|242
28LN|1|B5|A|243
28LN|1|B5|G|244

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BY

60S ribosomal protein L26