J4_28LN_006

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

28LN|1|B5|G|1270, 28LN|1|B5|C|1271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|C|980
28LN|1|B5|U|981
28LN|1|B5|C|982
*
28LN|1|B5|G|1069
28LN|1|B5|C|1070
28LN|1|B5|C|1071
*
28LN|1|B5|G|1239
28LN|1|B5|C|1240
28LN|1|B5|G|1241
28LN|1|B5|C|1242
*
28LN|1|B5|G|1267
28LN|1|B5|G|1268
28LN|1|B5|A|1269
28LN|1|B5|G|1270
28LN|1|B5|C|1271
28LN|1|B5|G|1272

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

Large ribosomal subunit protein eL6

Chain BF

Large ribosomal subunit protein uL30

Chain Bb

Large ribosomal subunit protein eL29