J4_28UH_002

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

28UH|1|A|C|183, 28UH|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UH|1|A|G|142
28UH|1|A|A|143
28UH|1|A|G|144
*
28UH|1|A|C|178
28UH|1|A|A|179
28UH|1|A|U|180
28UH|1|A|A|181
28UH|1|A|A|182
28UH|1|A|C|183
28UH|1|A|G|184
*
28UH|1|A|C|193
28UH|1|A|C|194
28UH|1|A|A|195
28UH|1|A|A|196
28UH|1|A|A|197
28UH|1|A|G|198
*
28UH|1|A|U|219
28UH|1|A|G|220
28UH|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20