J4_8B0X_002

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8B0X|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8B0X_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1514

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8B0X|1|A|G|142
8B0X|1|A|A|143
8B0X|1|A|G|144
*
8B0X|1|A|C|178
8B0X|1|A|A|179
8B0X|1|A|U|180
8B0X|1|A|A|181
8B0X|1|A|A|182
8B0X|1|A|C|183
8B0X|1|A|G|184
*
8B0X|1|A|C|193
8B0X|1|A|C|194
8B0X|1|A|A|195
8B0X|1|A|A|196
8B0X|1|A|A|197
8B0X|1|A|G|198
*
8B0X|1|A|U|219
8B0X|1|A|G|220
8B0X|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20