J4_28UH_005
3D structure
- PDB id
- 28UH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_28UH_005 not in the Motif Atlas
- Homologous match to J4_7A0S_002
- Geometric discrepancy: 0.0937
- The information below is about J4_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
28UH|1|a|G|297
28UH|1|a|G|298
28UH|1|a|A|299
28UH|1|a|A|300
28UH|1|a|G|301
*
28UH|1|a|C|316
28UH|1|a|G|317
28UH|1|a|C|318
28UH|1|a|G|319
*
28UH|1|a|C|323
28UH|1|a|A|324
28UH|1|a|G|325
*
28UH|1|a|C|337
28UH|1|a|G|338
28UH|1|a|U|339
28UH|1|a|A|340
28UH|1|a|C|341
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: