J4_28UH_006

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

28UH|1|a|U|653, 28UH|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UH|1|a|C|601
28UH|1|a|A|602
28UH|1|a|A|603
28UH|1|a|G|604
*
28UH|1|a|C|624
28UH|1|a|G|625
28UH|1|a|A|626
28UH|1|a|A|627
28UH|1|a|G|628
*
28UH|1|a|C|635
28UH|1|a|G|636
28UH|1|a|A|637
28UH|1|a|G|638
*
28UH|1|a|C|650
28UH|1|a|G|651
28UH|1|a|U|652
28UH|1|a|U|653
28UH|1|a|A|654
28UH|1|a|A|655
28UH|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15