J4_28UH_009
3D structure
- PDB id
- 28UH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 28UH|1|a|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_28UH_009 not in the Motif Atlas
- Homologous match to J4_7A0S_006
- Geometric discrepancy: 0.2471
- The information below is about J4_7A0S_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
28UH|1|a|U|1313
28UH|1|a|C|1314
*
28UH|1|a|G|1338
28UH|1|a|G|1339
28UH|1|a|U|1340
28UH|1|a|G|1341
28UH|1|a|A|1342
28UH|1|a|G|1343
*
28UH|1|a|C|1404
28UH|1|a|U|1405
*
28UH|1|a|A|1597
28UH|1|a|A|1598
28UH|1|a|U|1599
28UH|1|a|C|1600
28UH|1|a|G|1601
28UH|1|a|U|1602
28UH|1|a|A|1603
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain s
- Large ribosomal subunit protein uL23
Coloring options: