J4_28UH_014
3D structure
- PDB id
- 28UH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_28UH_014 not in the Motif Atlas
- Homologous match to J4_8B0X_014
- Geometric discrepancy: 0.0254
- The information below is about J4_8B0X_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
28UH|1|a|G|2643
28UH|1|a|G|2644
28UH|1|a|G|2645
28UH|1|a|C|2646
*
28UH|1|a|G|2674
28UH|1|a|A|2675
28UH|1|a|C|2676
*
28UH|1|a|G|2731
28UH|1|a|G|2732
28UH|1|a|A|2733
28UH|1|a|A|2734
28UH|1|a|G|2735
*
28UH|1|a|U|2769
28UH|1|a|G|2770
28UH|1|a|C|2771
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: