J4_28UH_014

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UH|1|a|G|2643
28UH|1|a|G|2644
28UH|1|a|G|2645
28UH|1|a|C|2646
*
28UH|1|a|G|2674
28UH|1|a|A|2675
28UH|1|a|C|2676
*
28UH|1|a|G|2731
28UH|1|a|G|2732
28UH|1|a|A|2733
28UH|1|a|A|2734
28UH|1|a|G|2735
*
28UH|1|a|U|2769
28UH|1|a|G|2770
28UH|1|a|C|2771

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13

Chain j

Large ribosomal subunit protein uL14