J4_28UI_006

3D structure

PDB id

28UI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

28UI|1|a|U|653, 28UI|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UI|1|a|C|601
28UI|1|a|A|602
28UI|1|a|A|603
28UI|1|a|G|604
*
28UI|1|a|C|624
28UI|1|a|G|625
28UI|1|a|A|626
28UI|1|a|A|627
28UI|1|a|G|628
*
28UI|1|a|C|635
28UI|1|a|G|636
28UI|1|a|A|637
28UI|1|a|G|638
*
28UI|1|a|C|650
28UI|1|a|G|651
28UI|1|a|U|652
28UI|1|a|U|653
28UI|1|a|A|654
28UI|1|a|A|655
28UI|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15