J4_28UJ_002

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

28UJ|1|A|C|183, 28UJ|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UJ|1|A|G|142
28UJ|1|A|A|143
28UJ|1|A|G|144
*
28UJ|1|A|C|178
28UJ|1|A|A|179
28UJ|1|A|U|180
28UJ|1|A|A|181
28UJ|1|A|A|182
28UJ|1|A|C|183
28UJ|1|A|G|184
*
28UJ|1|A|C|193
28UJ|1|A|C|194
28UJ|1|A|A|195
28UJ|1|A|A|196
28UJ|1|A|A|197
28UJ|1|A|G|198
*
28UJ|1|A|U|219
28UJ|1|A|G|220
28UJ|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20