J4_28UJ_004

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

28UJ|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_28UJ_004 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2688

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

28UJ|1|a|C|268
28UJ|1|a|C|269
*
28UJ|1|a|G|370
28UJ|1|a|A|371
28UJ|1|a|G|372
28UJ|1|a|U|373
28UJ|1|a|A|374
28UJ|1|a|G|375
*
28UJ|1|a|U|399
28UJ|1|a|G|400
28UJ|1|a|A|401
28UJ|1|a|A|402
28UJ|1|a|U|403
28UJ|1|a|A|404
28UJ|1|a|U|405
28UJ|1|a|G|406
*
28UJ|1|a|C|421
28UJ|1|a|A|422
28UJ|1|a|A|423
28UJ|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28