J4_28UK_004

3D structure

PDB id

28UK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

28UK|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_28UK_004 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2606

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

28UK|1|a|C|268
28UK|1|a|C|269
*
28UK|1|a|G|370
28UK|1|a|A|371
28UK|1|a|G|372
28UK|1|a|U|373
28UK|1|a|A|374
28UK|1|a|G|375
*
28UK|1|a|U|399
28UK|1|a|G|400
28UK|1|a|A|401
28UK|1|a|A|402
28UK|1|a|U|403
28UK|1|a|A|404
28UK|1|a|U|405
28UK|1|a|G|406
*
28UK|1|a|C|421
28UK|1|a|A|422
28UK|1|a|A|423
28UK|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28