J4_28UK_006

3D structure

PDB id

28UK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

28UK|1|a|U|653, 28UK|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UK|1|a|C|601
28UK|1|a|A|602
28UK|1|a|A|603
28UK|1|a|G|604
*
28UK|1|a|C|624
28UK|1|a|G|625
28UK|1|a|A|626
28UK|1|a|A|627
28UK|1|a|G|628
*
28UK|1|a|C|635
28UK|1|a|G|636
28UK|1|a|A|637
28UK|1|a|G|638
*
28UK|1|a|C|650
28UK|1|a|G|651
28UK|1|a|U|652
28UK|1|a|U|653
28UK|1|a|A|654
28UK|1|a|A|655
28UK|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15