J4_28UK_010

3D structure

PDB id

28UK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

GG*UU*AC*GC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_28UK_010 not in the Motif Atlas

Homologous match to J4_8B0X_010

Geometric discrepancy: 0.0438

The information below is about J4_8B0X_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

8

Unit IDs

28UK|1|a|G|1444
28UK|1|a|G|1445
*
28UK|1|a|U|1466
28UK|1|a|U|1467
*
28UK|1|a|A|1525
28UK|1|a|C|1526
*
28UK|1|a|G|1546
28UK|1|a|C|1547

Current chains

Chain a

23S rRNA

Nearby chains