J4_28UL_004
3D structure
- PDB id
- 28UL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 28UL|1|a|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_28UL_004 not in the Motif Atlas
- Homologous match to J4_7A0S_001
- Geometric discrepancy: 0.2713
- The information below is about J4_7A0S_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.3
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
28UL|1|a|C|268
28UL|1|a|C|269
*
28UL|1|a|G|370
28UL|1|a|A|371
28UL|1|a|G|372
28UL|1|a|U|373
28UL|1|a|A|374
28UL|1|a|G|375
*
28UL|1|a|U|399
28UL|1|a|G|400
28UL|1|a|A|401
28UL|1|a|A|402
28UL|1|a|U|403
28UL|1|a|A|404
28UL|1|a|U|405
28UL|1|a|G|406
*
28UL|1|a|C|421
28UL|1|a|A|422
28UL|1|a|A|423
28UL|1|a|G|424
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain h
- Large ribosomal subunit protein bL9
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: