J4_28UL_006

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

28UL|1|a|U|653, 28UL|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UL|1|a|C|601
28UL|1|a|A|602
28UL|1|a|A|603
28UL|1|a|G|604
*
28UL|1|a|C|624
28UL|1|a|G|625
28UL|1|a|A|626
28UL|1|a|A|627
28UL|1|a|G|628
*
28UL|1|a|C|635
28UL|1|a|G|636
28UL|1|a|A|637
28UL|1|a|G|638
*
28UL|1|a|C|650
28UL|1|a|G|651
28UL|1|a|U|652
28UL|1|a|U|653
28UL|1|a|A|654
28UL|1|a|A|655
28UL|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15