J4_28UM_004

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

28UM|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_28UM_004 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2714

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

28UM|1|a|C|268
28UM|1|a|C|269
*
28UM|1|a|G|370
28UM|1|a|A|371
28UM|1|a|G|372
28UM|1|a|U|373
28UM|1|a|A|374
28UM|1|a|G|375
*
28UM|1|a|U|399
28UM|1|a|G|400
28UM|1|a|A|401
28UM|1|a|A|402
28UM|1|a|U|403
28UM|1|a|A|404
28UM|1|a|U|405
28UM|1|a|G|406
*
28UM|1|a|C|421
28UM|1|a|A|422
28UM|1|a|A|423
28UM|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28