J4_28UM_005

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_28UM_005 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0977

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

28UM|1|a|G|297
28UM|1|a|G|298
28UM|1|a|A|299
28UM|1|a|A|300
28UM|1|a|G|301
*
28UM|1|a|C|316
28UM|1|a|G|317
28UM|1|a|C|318
28UM|1|a|G|319
*
28UM|1|a|C|323
28UM|1|a|A|324
28UM|1|a|G|325
*
28UM|1|a|C|337
28UM|1|a|G|338
28UM|1|a|U|339
28UM|1|a|A|340
28UM|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24