J4_28UM_006

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

28UM|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UM|1|a|C|601
28UM|1|a|A|602
28UM|1|a|A|603
28UM|1|a|G|604
*
28UM|1|a|C|624
28UM|1|a|G|625
28UM|1|a|A|626
28UM|1|a|A|627
28UM|1|a|G|628
*
28UM|1|a|C|635
28UM|1|a|G|636
28UM|1|a|A|637
28UM|1|a|G|638
*
28UM|1|a|C|650
28UM|1|a|G|651
28UM|1|a|U|652
28UM|1|a|U|653
28UM|1|a|A|654
28UM|1|a|A|655
28UM|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15