J4_28UM_011
3D structure
- PDB id
- 28UM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- AACUG*CACAG*UGAC*GUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_28UM_011 not in the Motif Atlas
- Homologous match to J4_7A0S_008
- Geometric discrepancy: 0.0663
- The information below is about J4_7A0S_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.6
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
28UM|1|a|A|1772
28UM|1|a|A|1773
28UM|1|a|C|1774
28UM|1|a|U|1775
28UM|1|a|G|1776
*
28UM|1|a|C|1788
28UM|1|a|A|1789
28UM|1|a|C|1790
28UM|1|a|A|1791
28UM|1|a|G|1792
*
28UM|1|a|U|1827
28UM|1|a|G|1828
28UM|1|a|A|1829
28UM|1|a|C|1830
*
28UM|1|a|G|1975
28UM|1|a|U|1976
28UM|1|a|A|1977
28UM|1|a|A|1978
28UM|1|a|U|1979
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: