J4_28UN_006

3D structure

PDB id

28UN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

28UN|1|a|U|653, 28UN|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UN|1|a|C|601
28UN|1|a|A|602
28UN|1|a|A|603
28UN|1|a|G|604
*
28UN|1|a|C|624
28UN|1|a|G|625
28UN|1|a|A|626
28UN|1|a|A|627
28UN|1|a|G|628
*
28UN|1|a|C|635
28UN|1|a|G|636
28UN|1|a|A|637
28UN|1|a|G|638
*
28UN|1|a|C|650
28UN|1|a|G|651
28UN|1|a|U|652
28UN|1|a|U|653
28UN|1|a|A|654
28UN|1|a|A|655
28UN|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15