J4_28ZX_001

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GU(1MG)(2MG)C*GU(2MG)C*GAG(M7G)(H2U)(5MC)G*CC

Length

18 nucleotides

Bulged bases

28ZX|1|G|U|9, 28ZX|1|G|H2U|47, 28ZX|1|G|5MC|48

QA status

Modified nucleotides: 1MG, 2MG, M7G, H2U, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZX|1|G|G|8
28ZX|1|G|U|9
28ZX|1|G|1MG|10
28ZX|1|G|2MG|11||1
28ZX|1|G|C|12
*
28ZX|1|G|G|24
28ZX|1|G|U|25
28ZX|1|G|2MG|26
28ZX|1|G|C|27
*
28ZX|1|G|G|43
28ZX|1|G|A|44
28ZX|1|G|G|45
28ZX|1|G|M7G|46
28ZX|1|G|H2U|47
28ZX|1|G|5MC|48
28ZX|1|G|G|49
*
28ZX|1|G|C|65
28ZX|1|G|C|66

Current chains

Chain G

initiator tRNA

Nearby chains

Chain D

Eukaryotic translation initiation factor 2 subunit 1

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18