J4_2AAR_002

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAGC*GGCGGAG*CGAGU*GGCGGCAUUAG

Length

28 nucleotides

Bulged bases

2AAR|1|0|A|648, 2AAR|1|0|A|665, 2AAR|1|0|U|666, 2AAR|1|0|U|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2AAR|1|0|C|611
2AAR|1|0|G|612
2AAR|1|0|A|613
2AAR|1|0|G|614
2AAR|1|0|C|615
*
2AAR|1|0|G|633
2AAR|1|0|G|634
2AAR|1|0|C|635
2AAR|1|0|G|636
2AAR|1|0|G|637
2AAR|1|0|A|638
2AAR|1|0|G|639
*
2AAR|1|0|C|646
2AAR|1|0|G|647
2AAR|1|0|A|648
2AAR|1|0|G|649
2AAR|1|0|U|650
*
2AAR|1|0|G|659
2AAR|1|0|G|660
2AAR|1|0|C|661
2AAR|1|0|G|662
2AAR|1|0|G|663
2AAR|1|0|C|664
2AAR|1|0|A|665
2AAR|1|0|U|666
2AAR|1|0|U|667
2AAR|1|0|A|668
2AAR|1|0|G|669

Current chains

Chain 0

23S ribosomal RNA

Nearby chains