J4_2AAR_004

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

2AAR|1|0|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2AAR_004 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.1272

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

2AAR|1|0|G|1323
2AAR|1|0|G|1324
2AAR|1|0|U|1325
2AAR|1|0|U|1326
2AAR|1|0|C|1327
*
2AAR|1|0|G|1351
2AAR|1|0|G|1352
2AAR|1|0|A|1353
2AAR|1|0|A|1354
2AAR|1|0|A|1355
2AAR|1|0|G|1356
*
2AAR|1|0|C|1417
2AAR|1|0|C|1418
*
2AAR|1|0|G|1613
2AAR|1|0|C|1614
2AAR|1|0|C|1615
2AAR|1|0|C|1616
2AAR|1|0|G|1617
2AAR|1|0|U|1618
2AAR|1|0|A|1619
2AAR|1|0|C|1620

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 7

Trigger Factor

Chain R

50S ribosomal protein L23

Chain W

50S ribosomal protein L29