J4_2AAR_005

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUG*UUGGUACGCU*GACGUAUCGGGAGCU*AGCGAAGU

Length

36 nucleotides

Bulged bases

2AAR|1|0|U|1459, 2AAR|1|0|C|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2AAR|1|0|A|1458
2AAR|1|0|U|1459
2AAR|1|0|G|1460
*
2AAR|1|0|U|1481
2AAR|1|0|U|1482
2AAR|1|0|G|1483
2AAR|1|0|G|1484
2AAR|1|0|U|1485
2AAR|1|0|A|1486
2AAR|1|0|C|1487
2AAR|1|0|G|1488
2AAR|1|0|C|1489
2AAR|1|0|U|1490
*
2AAR|1|0|G|1533
2AAR|1|0|A|1534
2AAR|1|0|C|1535
2AAR|1|0|G|1536
2AAR|1|0|U|1537
2AAR|1|0|A|1538
2AAR|1|0|U|1539
2AAR|1|0|C|1540
2AAR|1|0|G|1541
2AAR|1|0|G|1542
2AAR|1|0|G|1543
2AAR|1|0|A|1544
2AAR|1|0|G|1545
2AAR|1|0|C|1546
2AAR|1|0|U|1547
*
2AAR|1|0|A|1556
2AAR|1|0|G|1557
2AAR|1|0|C|1558
2AAR|1|0|G|1559
2AAR|1|0|A|1560
2AAR|1|0|A|1561
2AAR|1|0|G|1562
2AAR|1|0|U|1563

Current chains

Chain 0

23S ribosomal RNA

Nearby chains