J4_2AAR_008

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

2AAR|1|0|U|1909, 2AAR|1|0|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2AAR_008 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.5035

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

2AAR|1|0|C|1825
2AAR|1|0|U|1826
2AAR|1|0|G|1827
*
2AAR|1|0|C|1888
2AAR|1|0|G|1889
*
2AAR|1|0|C|1907
2AAR|1|0|C|1908
2AAR|1|0|U|1909
2AAR|1|0|A|1910
2AAR|1|0|A|1911
2AAR|1|0|G|1912
2AAR|1|0|G|1913
2AAR|1|0|U|1914
2AAR|1|0|A|1915
2AAR|1|0|G|1916
*
2AAR|1|0|C|1950
2AAR|1|0|G|1951
2AAR|1|0|A|1952
2AAR|1|0|A|1953
2AAR|1|0|A|1954
2AAR|1|0|G|1955

Current chains

Chain 0

23S ribosomal RNA

Nearby chains