J4_2AKE_003

3D structure

PDB id

2AKE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human tryptophanyl-tRNA synthetase in complex with tRNA(Trp)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGG*CGU*AAGGUUG*UC

Length

16 nucleotides

Bulged bases

2AKE|1|B|U|8, 2AKE|1|B|G|9, 2AKE|1|B|G|45, 2AKE|1|B|G|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58434.1

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

2AKE|1|B|G|7
2AKE|1|B|U|8
2AKE|1|B|G|9
2AKE|1|B|G|10
*
2AKE|1|B|C|25
2AKE|1|B|G|26
2AKE|1|B|U|27
*
2AKE|1|B|A|43
2AKE|1|B|A|44
2AKE|1|B|G|45
2AKE|1|B|G|46
2AKE|1|B|U|47
2AKE|1|B|U|48
2AKE|1|B|G|49
*
2AKE|1|B|U|65
2AKE|1|B|C|66

Current chains

Chain B

transfer RNA-Trp

Nearby chains

Chain A

Tryptophanyl-tRNA synthetase