Motif J4_82510.1 Version J4_82510.1 of this group appears in releases 4.1 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 1-15 | 4-5 | 4-10 | 6-9 | 7-8 | 11-12 | 13-14 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_5CCB_001 | 5CCB | 0.0000 | 1 | tRNA junction | N | tRNA | A | 7 | U | 8 | A | 9 | G | 10 | * | C | 25 | A | 26 | U | 27 | * | A | 43 | G | 44 | G | 45 | G | 46 | C | 48 | C | 49 | * | G | 65 | U | 66 | cWW | cWW | ncHS | cWW | cWW | cWW | |
| 2 | J4_2AKE_003 | 2AKE | 0.8547 | 1 | tRNA junction | B | tRNA | G | 7 | U | 8 | G | 9 | G | 10 | * | C | 25 | G | 26 | U | 27 | * | A | 43 | A | 44 | G | 45 | U | 47 | U | 48 | G | 49 | * | U | 65 | C | 66 | cWW | cWW | ncWW | ncWW | ncSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAG*CAU*AGGGUCC*GU | 1 |
| GUGG*CGU*AAGGUUG*UC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*A*GGGUC* | 1 |
| UG*G*AGGUU* | 1 |
Release history
| Release | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 |
|---|---|---|---|---|---|---|---|
| Date | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA junction (2)
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F
- Heat map statistics
- Min 0.85 | Avg 0.43 | Max 0.85
Coloring options: