Motif J4_82510.1 Version J4_82510.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 1-12 | 2-3 | 4-7 | 5-6 | 8-9 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_2AKE_003 | 2AKE | 0.0000 | 4 | tRNA junction | B | tRNA | G | 7 | G | 10 | * | C | 25 | G | 26 | U | 27 | * | A | 43 | A | 44 | U | 47 | U | 48 | G | 49 | * | U | 65 | C | 66 | cWW | cWW | ncWW | ncWW | ncSH | cWW |
| 2 | J4_5CCB_001 | 5CCB | 0.8547 | 4 | tRNA junction | N | tRNA | A | 7 | G | 10 | * | C | 25 | A | 26 | U | 27 | * | A | 43 | G | 44 | G | 46 | C | 48 | C | 49 | * | G | 65 | U | 66 | cWW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGG*CGU*AAGGUUG*UC | 1 |
| AUAG*CAU*AGGGUCC*GU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG*G*AGGUU* | 1 |
| UA*A*GGGUC* | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA junction (2)
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F
- Heat map statistics
- Min 0.85 | Avg 0.43 | Max 0.85
Coloring options: