J4_2CV1_003

3D structure

PDB id

2CV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.41 Å

Loop

Sequence

AUCG*CGC*GAAACG*CU

Length

15 nucleotides

Bulged bases

2CV1|1|C|U|508, 2CV1|1|C|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2CV1_003 not in the Motif Atlas

Homologous match to J4_1N78_001

Geometric discrepancy: 0.0667

The information below is about J4_1N78_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

2CV1|1|C|A|507
2CV1|1|C|U|508
2CV1|1|C|C|509
2CV1|1|C|G|510
*
2CV1|1|C|C|525
2CV1|1|C|G|526
2CV1|1|C|C|527
*
2CV1|1|C|G|543
2CV1|1|C|A|544
2CV1|1|C|A|545
2CV1|1|C|A|546
2CV1|1|C|C|548
2CV1|1|C|G|549
*
2CV1|1|C|C|565
2CV1|1|C|U|566

Current chains

Chain C

tRNA

Nearby chains

Chain A

glutamyl-tRNA synthetase