J4_2D3O_001

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2D3O_001 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1338

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

2D3O|1|0|C|308
2D3O|1|0|G|309
2D3O|1|0|A|310
2D3O|1|0|A|311
2D3O|1|0|G|312
*
2D3O|1|0|C|327
2D3O|1|0|A|328
2D3O|1|0|C|329
2D3O|1|0|C|330
*
2D3O|1|0|G|334
2D3O|1|0|A|335
2D3O|1|0|A|336
*
2D3O|1|0|U|348
2D3O|1|0|G|349
2D3O|1|0|U|350
2D3O|1|0|A|351
2D3O|1|0|G|352

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain S

50S RIBOSOMAL PROTEIN L24