J4_2D3O_006

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2D3O_006 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.1089

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

2D3O|1|0|G|1763
2D3O|1|0|A|1764
2D3O|1|0|C|1765
2D3O|1|0|U|1766
2D3O|1|0|G|1767
*
2D3O|1|0|C|1779
2D3O|1|0|A|1780
2D3O|1|0|C|1781
2D3O|1|0|A|1782
2D3O|1|0|G|1783
*
2D3O|1|0|U|1819
2D3O|1|0|G|1820
2D3O|1|0|A|1821
2D3O|1|0|C|1822
*
2D3O|1|0|G|1958
2D3O|1|0|U|1959
2D3O|1|0|A|1960
2D3O|1|0|A|1961
2D3O|1|0|C|1962

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains