J4_2D3O_013

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2D3O_013 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.0966

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

2D3O|1|0|G|2622
2D3O|1|0|A|2623
2D3O|1|0|G|2624
2D3O|1|0|U|2625
*
2D3O|1|0|A|2653
2D3O|1|0|A|2654
2D3O|1|0|C|2655
*
2D3O|1|0|G|2711
2D3O|1|0|G|2712
2D3O|1|0|A|2713
2D3O|1|0|A|2714
2D3O|1|0|C|2715
2D3O|1|0|G|2716
*
2D3O|1|0|C|2748
2D3O|1|0|A|2749
2D3O|1|0|G|2750
2D3O|1|0|C|2751

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains