J4_2DER_001

3D structure

PDB id

2DER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUCG*CAC*GUAACA*UA

Length

15 nucleotides

Bulged bases

2DER|1|C|U|8, 2DER|1|C|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2DER_001 not in the Motif Atlas

Homologous match to J4_5HR6_001

Geometric discrepancy: 0.2115

The information below is about J4_5HR6_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

2DER|1|C|U|7
2DER|1|C|U|8
2DER|1|C|C|9
2DER|1|C|G|10
*
2DER|1|C|C|25
2DER|1|C|A|26
2DER|1|C|C|27
*
2DER|1|C|G|43
2DER|1|C|U|44
2DER|1|C|A|45
2DER|1|C|A|46
2DER|1|C|C|47
2DER|1|C|A|49
*
2DER|1|C|U|65
2DER|1|C|A|66

Current chains

Chain C

tRNA

Nearby chains

Chain A

tRNA-specific 2-thiouridylase mnmA