2DER Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2DER_001 | 1/C/13:22 | No text annotation | geometric HL_2DER_004 HL_78347.4 | |
| HL_2DER_002 | 1/C/31:39 | No text annotation | geometric HL_2DER_005 HL_64690.6 | |
| HL_2DER_003 | 1/C/53:61 | T-loop with 2 stacked bulged bases | geometric HL_2DER_006 HL_28252.8 | |
| HL_2DER_004 | 1/D/13:22 | No text annotation HL_78347.4 | ||
| HL_2DER_005 | 1/D/31:39 | No text annotation HL_64690.6 | ||
| HL_2DER_006 | 1/D/53:61 | T-loop with 2 stacked bulged bases HL_28252.8 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2DER_001 | 1/C/4:7, 1/C/66:68 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2DER_002 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_2DER_001 | 1/C/7:10, 1/C/25:27, 1/C/43:49, 1/C/65:66 | No text annotation | ||
| J4_2DER_002 | 1/D/7:10, 1/D/25:27, 1/D/43:49, 1/D/65:66 | tRNA junction J4_70449.28 |
Problematic loops
No problematic loops
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