J4_2DU3_003

3D structure

PDB id

2DU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys and O-phosphoserine

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUGG*CGGC*GCUUUACC*GC

Length

18 nucleotides

Bulged bases

2DU3|1|D|U|943, 2DU3|1|D|U|944, 2DU3|1|D|U|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_65285.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

2DU3|1|D|G|907
2DU3|1|D|U|908
2DU3|1|D|G|909
2DU3|1|D|G|910
*
2DU3|1|D|C|924
2DU3|1|D|G|925
2DU3|1|D|G|926
2DU3|1|D|C|927
*
2DU3|1|D|G|941
2DU3|1|D|C|942
2DU3|1|D|U|943
2DU3|1|D|U|944
2DU3|1|D|U|945
2DU3|1|D|A|946
2DU3|1|D|C|947
2DU3|1|D|C|948
*
2DU3|1|D|G|964
2DU3|1|D|C|965

Current chains

Chain D

tRNA

Nearby chains

Chain A

O-phosphoseryl-tRNA synthetase