J4_2DU4_003
3D structure
- PDB id
- 2DU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGG*CGGC*GCUUUACC*GC
- Length
- 18 nucleotides
- Bulged bases
- 2DU4|1|C|U|943, 2DU4|1|C|U|944, 2DU4|1|C|U|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2DU4_003 not in the Motif Atlas
- Homologous match to J4_2DU3_003
- Geometric discrepancy: 0.1414
- The information below is about J4_2DU3_003
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
2DU4|1|C|G|907
2DU4|1|C|U|908
2DU4|1|C|G|909
2DU4|1|C|G|910
*
2DU4|1|C|C|924
2DU4|1|C|G|925
2DU4|1|C|G|926
2DU4|1|C|C|927
*
2DU4|1|C|G|941
2DU4|1|C|C|942
2DU4|1|C|U|943
2DU4|1|C|U|944
2DU4|1|C|U|945
2DU4|1|C|A|946
2DU4|1|C|C|947
2DU4|1|C|C|948
*
2DU4|1|C|G|964
2DU4|1|C|C|965
Current chains
- Chain C
- tRNA
Nearby chains
- Chain A
- O-phosphoseryl-tRNA synthetase
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