J4_2FMT_001

3D structure

PDB id

2FMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

G(4SU)GG*CGU*AAGAUCG*CC

Length

16 nucleotides

Bulged bases

2FMT|1|C|4SU|8, 2FMT|1|C|U|47, 2FMT|1|C|C|48

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2FMT_001 not in the Motif Atlas

Homologous match to J4_6CFJ_015

Geometric discrepancy: 0.2287

The information below is about J4_6CFJ_015

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

2FMT|1|C|G|7
2FMT|1|C|4SU|8
2FMT|1|C|G|9
2FMT|1|C|G|10
*
2FMT|1|C|C|25
2FMT|1|C|G|26
2FMT|1|C|U|27
*
2FMT|1|C|A|43
2FMT|1|C|A|44
2FMT|1|C|G|45
2FMT|1|C|A|46
2FMT|1|C|U|47
2FMT|1|C|C|48
2FMT|1|C|G|49
*
2FMT|1|C|C|65
2FMT|1|C|C|66

Current chains

Chain C

FORMYL-METHIONYL-TRNAFMET2

Nearby chains

Chain A

METHIONYL-TRNA FMET FORMYLTRANSFERASE

Chain B

METHIONYL-TRNA FMET FORMYLTRANSFERASE